Publications

Journal Articles

• Artificial Intelligence-enabled Histological Analysis in Pre-clinical Respiratory Disease Models: A Scoping Review
  E. Kuhar, J. Park, F. Jahandideh, M. Komeili, A. Sadeknury, N. Kang, P. Karunamurthy, M.R. Zarei, A.H. Ebrahimi, S.E. Gill, P.C. Liaw, D.A. Fergusson, D.J. Stewart, A. Mer, M.M. Lalu
  European Respiratory Review, 2026; 35(180):250243
  DOI
• High-Performance and Configurable SW/HW Co-Design of Biologically Plausible Neural Networks
  A.H. Ebrahimi, H. Vafaei, M. Asghari, A. Sadr, D. Rahmati
  ACM Transactions on Reconfigurable Technology and Systems (TRETS), 2026 (in press)
• Text-Mining Based Feature Selection for Anticancer Drug Response Prediction
  G. Wu, A. Zaker, A.H. Ebrahimi, S. Tripathi, A. Mer
  Bioinformatics Advances, 2024; 4(1):vbae047
  DOI

Conference Proceedings

• OmicSieve: A General Omics Framework for Compact Component Embeddings
  A.H. Ebrahimi, R. Afiz, A. Mer
  2026 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB 2026) (in press)
• From Data Annotation to AI Prediction: Streamlining Histopathology Analysis in Acute Respiratory Distress Syndrome
  A.H. Ebrahimi, M.R. Zarei, E. Kuhar, P. Karunamurthy, K. Pillagawa, F. Jahandideh, M. Komeili, M. Lalu, A. Mer
  Proceedings of the 38th Canadian Conference on Artificial Intelligence (Canadian AI 2025)
  DOI
• A New Approach for Minimum Dominating Set Problem
  S. Alipour, A.H. Ebrahimi
  ACM CIKM, 2024
  Read more
• Estimating Stochastic Model Parameters Using Residual Neural Networks
  A.H. Ebrahimi, H. Vafaei, D. Rahmati
  NIC, 2022
  Page 128

Book Chapter

• Basics of Machine Learning
  A.H. Ebrahimi, H.V. Sefat, J.A. Rad
  Chapter 1 in Dimensionality Reduction in Machine Learning (J.A. Rad, S. Chakraverty, K. Parand, Eds.), pp. 3–38, Elsevier, 2025
  DOI

Conference Abstract

• Deciphering Genomic Correlates of Differential Treatment Response Kinetics in Multiple Myeloma
  B. Patrick, A.H. Ebrahimi, A. Visram, A. Mer
  Clinical Lymphoma, Myeloma & Leukemia, 2025; 25(Suppl. 2):S153–S154 (poster, 22nd International Myeloma Society Annual Meeting, Toronto)
  DOI